MindMap Gallery Bio-enzymatic metabolism
This is a mind map about biological-enzyme metabolism. Enzymes are biological macromolecules with active centers and special conformations that are produced by living cells and play the same catalytic role in vivo or in vitro, so they are also called biocatalysts.
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This is a mind map about bacteria, and its main contents include: overview, morphology, types, structure, reproduction, distribution, application, and expansion. The summary is comprehensive and meticulous, suitable as review materials.
This is a mind map about plant asexual reproduction, and its main contents include: concept, spore reproduction, vegetative reproduction, tissue culture, and buds. The summary is comprehensive and meticulous, suitable as review materials.
This is a mind map about the reproductive development of animals, and its main contents include: insects, frogs, birds, sexual reproduction, and asexual reproduction. The summary is comprehensive and meticulous, suitable as review materials.
enzyme metabolism
Overview
concept
Enzymes are produced by living cells and perform the same catalytic function in vivo or in vitro. Biological macromolecules with active centers and special conformations, so they are also called Bio-catalyst
Catalytic characteristics
Efficiency
Enzymes have high catalytic efficiency
Mildness
Enzyme-catalyzed reactions require mild reaction conditions
sensitivity
Generally, conditions that denature biological macromolecules can cause enzymes to lose their catalytic activity.
Adjustability
Enzyme activity can be adjusted by controlling environmental conditions to adjust the reaction rate
specificity
structural specificity
absolute specificity
relative specificity
group specificity
key specificity
Stereospecificity
optical specificity
geometric specificity
Classification
Enzymatic reaction type
Oxidoreductases, transferases, hydrolases, polymerases Class, isomerase, synthase, isozyme
The composition of enzyme molecules
pure protein
conjugated protein
The structure of an enzyme molecule
monomeric enzyme
Usually there is only one polypeptide chain, most of which are enzymes that catalyze hydrolysis
Oligomerase
An enzyme composed of two or more subunits, which may be the same or different
multienzyme complex
A complex consisting of several enzymes chimeric to each other
Factors affecting the speed of enzymatic reactions
substrate concentration
Michaelis-Menten equation
Biological significance of Michaelis constant
The Km value is a characteristic constant of an enzyme and is only related to the nature of the enzyme and the substrate catalyzed by the enzyme. It is related to the conditions of the enzymatic reaction and has nothing to do with the concentration of the enzyme.
The substrate with the smallest Km is called the optimal substrate or natural substrate
The larger the Km value, the smaller the affinity between the enzyme and the substrate.
inhibitor
concept
Any substance that can reduce the catalytic activity of an enzyme without causing denaturation of the enzyme protein
Classification
irreversible inhibitor
non-specific inhibitor
specific inhibitor
Reversible inhibitor
competitive inhibition
I is similar to S and competes for the active center. Adding [S] removes the inhibition. Vm remains unchanged, Km increases
noncompetitive inhibition
I is not similar to S, and the inhibition cannot be removed by adding [S]. Vm becomes smaller, Km remains unchanged
anticompetitive inhibitor
Only after ES is formed can it work. Vm becomes smaller, Km becomes smaller
temperature
At the optimal temperature, enzyme activity is maximum and reaction speed is the highest.
activator
Any substance that can increase enzyme activity
pH
Too high or too low pH can lead to changes in the higher-order structure of enzymes
Affects the dissociation state of enzyme molecules
Affects the active center conformation of enzymes
Affects the dissociation state of substrate molecules
enzyme concentration
【E】Proportional to V
Determination of enzyme activity
The concept of enzyme activity
The ability of an enzyme to catalyze a chemical reaction
enzymatic reaction speed
The decrease in substrate or the increase in product per unit sample and unit time
international enzyme activity unit
The amount of enzyme that catalyzes the conversion of 1 mole of substrate into product per minute under optimal conditions
regulatory enzymes
allosteric enzyme
concept
After the regulator is combined with the regulatory site of the enzyme molecule through non-covalent bonds, Causes changes in the conformation of the enzyme and thereby changes the active state of the enzyme, which has An enzyme with allosteric regulation
allosteric effect
positive synergy
The enzyme's affinity for the substrate increases rapidly
S shape
negative synergy
The enzyme's affinity for the substrate decreases rapidly
hyperbola
Features
Changes in enzyme activity are achieved through changes in the conformation of the enzyme molecule
Allostery of enzymes involves only changes in non-covalent bonds
Factors that regulate enzyme activity are metabolites
non-energy consuming process
No amplification effect
Features
[S] changes little, V changes big
function or meaning
As regulatory enzymes in metabolic pathways
isoenzyme
concept
catalyze the same chemical reaction, and the molecular structure of the enzyme protein, A group of enzymes with different physical and chemical properties and even immunological properties
cause
Different genes produce different proteins
production mechanism
Monomeric enzyme, oligomeric enzyme
covalently modified regulatory enzyme
concept
Chemical modification of enzymes is another way of rapid regulation in the body
Characteristics of covalent modification regulation
Enzymes exist in two differently modified and differently active forms
There are changes in covalent bonds
Influenced by other regulatory factors such as hormones
Generally an energy-consuming process
There is an amplification effect
zymogen activation
Can protect biological cells and enable enzymes to work at specific sites
Mechanism
active center
concept
The region of an enzyme molecule that directly binds to a substrate and catalyzes a chemical reaction with the substrate to produce a product.
essential group
binding group
Types of enzymatic reactions and catalytic properties of enzymes
catalytic group
Enzyme specificity for substrate
Features
The active center only accounts for a small part of the enzyme molecule volume (1%-2%)
The active center is a crack in the three-dimensional structure
The conformation of the enzyme active center and the conformation of the substrate are not necessarily complementary. Only when the enzyme binds to its substrate does its conformation occur changes so that the two complement each other
The active center is located in the clefts (pits, holes) on the enzyme surface. which is equivalent to a hydrophobic environment
The substrate binds to the active center of the enzyme through secondary bonds
The conformation of the active center is mobile
Enzyme and substrate binding
Rigid formwork
Three Points of Attachment Theory
lock and key theory
Flexible template
induced fit theory
transition state complementarity theory
Factors that reduce reaction activation energy
proximity and orientation
substrate-sensitive bond distortion
covalent catalysis
nucleophilic catalysis
electrophilic catalysis
Acid-base catalysis
The imidazole group of histamine is the most active functional group. Donate and accept protons very quickly
Metal ion catalysis
Impact of hydrophobic microenvironment (low dielectric microenvironment)
The hydrophobic environment is conducive to enzyme catalysis, Helps reduce reaction activation energy
Isolation and Purification
Total protein: protein concentration × volume
Total vitality: total vitality units × volume
Pay attention to the denaturation of enzymes: always keep low temperature (0-4 degrees), Avoid violent stirring, avoid strong acids and alkalis, add protective agents, etc.
multi-enzyme system
All enzymes that catalyze a metabolic reaction