MindMap Gallery Biochemistry mind map
Review outline for sophomore biochemistry protein. Proteins are biological macromolecules with certain functions formed by condensation of multiple α-amino acids through peptide bonds in a certain sequence.
Edited at 2023-10-25 23:13:10This is a mind map about bacteria, and its main contents include: overview, morphology, types, structure, reproduction, distribution, application, and expansion. The summary is comprehensive and meticulous, suitable as review materials.
This is a mind map about plant asexual reproduction, and its main contents include: concept, spore reproduction, vegetative reproduction, tissue culture, and buds. The summary is comprehensive and meticulous, suitable as review materials.
This is a mind map about the reproductive development of animals, and its main contents include: insects, frogs, birds, sexual reproduction, and asexual reproduction. The summary is comprehensive and meticulous, suitable as review materials.
This is a mind map about bacteria, and its main contents include: overview, morphology, types, structure, reproduction, distribution, application, and expansion. The summary is comprehensive and meticulous, suitable as review materials.
This is a mind map about plant asexual reproduction, and its main contents include: concept, spore reproduction, vegetative reproduction, tissue culture, and buds. The summary is comprehensive and meticulous, suitable as review materials.
This is a mind map about the reproductive development of animals, and its main contents include: insects, frogs, birds, sexual reproduction, and asexual reproduction. The summary is comprehensive and meticulous, suitable as review materials.
protein
protein definition
A biological macromolecule with certain functions formed by the condensation of a variety of α-amino acids through peptide bonds in a certain sequence.
Protein nitrogen content
The main elements are C.H.O.N.P.S. The average content of N in protein is 16%. 1gN protein is equivalent to 6.25g of protein. If measured by Kjeldahl method, the result may be higher (because there may be pollutants similar to those in the air). Inorganic nitrogen such as nitrogen is measured in it)
Classification of proteins
Based on shape and solubility
fibrous protein
globular protein
Membrane Protein
According to chemical composition
Simple protein (consisting only of peptide chains)
Binding protein (simple protein prosthetic group)
Classified by function
enzyme
regulatory protein
storage protein
transporter protein
motor protein
Defense proteins and toxin proteins
receptor protein
scaffold protein
structural protein
Abnormally functional proteins
Composition - amino acids
Definition of amino acids
In a broad sense, it refers to compounds with both amino and carboxyl groups; there are 20 amino acids used by organisms to synthesize proteins; except for proline, all others are a-amino acids
protein hydrolysis
Acid hydrolysis: does not cause racemization and obtains L-amino acids
The difference between L-type and D-type lies in the position of the amino group. The amino group is on the left for L-type and on the right for D-type.
Alkaline hydrolysis: racemization occurs and a mixture of L/D-amino acids is obtained, but tryptophan is not destroyed
Enzyme hydrolysis: does not produce racemization and does not destroy amino acids, but requires multiple enzymes and is time-consuming
The general structural formula of amino acids
Except for glycine, the rest of the a-amino acids are optically active (because their a-C are all asymmetric carbon atoms) and all have L/D-form; except for glycine and proline, all those obtained by protein hydrolysis are L-a-amino acids; D-amino acids found in some antibiotics
Common amino acids in proteins (classification): directly involved in protein synthesis
Polarity of R group
Nonpolar R-based amino acids
Methyl sulfide, valerian, iso, benzene, propylene, sweet, bright, color, preserved
Polar R-based amino acids
without charge
Casein, day, cysteine, silk, soda, glutamine
Positively charged
group, fine, lai
negatively charged
Valley, sky
Structure of R base
aliphatic amino acids
Neutral: C, sweet, valerian, bright, unusually bright
Contains -OH/S: Silk, Cyst, A, Su
Acid/amide: glutamine (amide), glutamine, aspartate (acid), (asparagine) (amine)
Alkaline: Lai, Jing
aromatic amino acids
Styrene, acrylic, cheese, color
Heterocyclic amino acids
group, preserved
Heterocyclic imine
breast
Uncommon amino acids in protein
It is not directly involved in protein synthesis and is a product of post-translational modification of common amino acids; although selenocysteine (sec) and pyrrolysine (ply) are uncommon amino acids, they can be directly involved in protein synthesis. among
Non-protein amino acids and amino acid derivatives
It is not directly involved in protein synthesis, nor is it a product of common post-translational modification of amino acids.
Physicochemical properties of amino acids
General physical and chemical properties
Colorless crystal with extremely high melting point, soluble in water but not in organic solvents
Optical activity
Configuration (characteristics of the general structural formula)
Light absorption: The maximum UV absorption peak of protein is 280nm. Its UV absorption ability mainly comes from proteins containing benzene rings (conjugation effect caused by alternating single and double bonds of benzene rings), phenylalanine and tyrosine (originally tryptophan acidic, but there is very little tryptophan in protein, so it mainly comes from these two)
Zwitterionic ionization and isoelectric point of amino acids
When the degree of dissociation of the amino and carboxyl groups on the amino acid molecules in the amino acid solution is the same, that is, the net charge carried by the amino acid is 0, the pH of the solution at this time is the size of the isoelectric point, and the isoelectric point is represented by PI, that is PH=PI, at this time the solubility of amino acids is minimum; when PH>PI, the solution is negatively charged; when PH<PI, the solution is positively charged
chemical properties of amino acids
Reactions in which a-amino group participates:
Reacts with formaldehyde: free amino acids can be measured to determine the reaction process
Reaction with nitrous acid: measure the volume of nitrogen under standard conditions to calculate the content of amino acids - Van Slyke method
Reaction with acylating reagent: the amino group is acylated and can be used to protect the amino group
Alkylation reaction
With 2,4-dinitrofluorobenzene (FDNB): Identification of protein terminal amino acids by paper chromatography - Sanger method
With 5-dimethylaminonaphthalenesulfonyl chloride (dansyl chloride, DNS-Cl): only a trace amount of protein sample is needed, and the N-terminal amino acid can be measured by fluorescence photometry.
With phenyl isothiocyanate (PITC): the amino acid sequence of the N-terminus of the polypeptide chain can be determined - Edman degradation method
Reacts with fluorescamine: very sensitive and can detect nanogram levels of amino acids
Formation of Sievert's base reaction: an intermediate step in the transamino acid reaction
Deamination reaction: an important intermediate step in the decomposition reaction of amino acids
Reaction in which a-amino and a-carboxyl groups participate together
With ninhydrin: a blue-purple complex is finally generated, which is used to detect the content of amino acids in the sample (proline and hydroxyproline are not a-amino acids, and do not release ammonia gas during the reaction, and produce yellow substances)
peptide reaction
Side face R base participation reaction
With 5,5-disulfo-bis(2-nitrobenzoic acid, DTNB): Determine the content of free-SH in the sample
Reaction in which a-carboxyl group participates
Salt formation and ester formation: used to protect carboxyl groups
Acid chloride-forming reaction: used for activation of carboxyl groups
Decarboxylation reaction: an important reaction to form amines
Azide reaction: used for activation of carboxyl groups
peptide