MindMap Gallery Derivation and validation of clinical strategies for cancer-related thrombosis in two unique U.S. health care systems
This is a mind map on the derivation and validation of cancer-related thrombosis in two unique US health care systems. The main contents include: supplementary materials, tables and figures, words and tables, abstract, title.
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Derivation and validation of a clinical risk assessment model for cancer-related thrombosis in two unique U.S. healthcare systems
topic
Derivation and Validation of a Clinical Risk Assessment Model for Cancer-Associated Thrombosis in Two Unique US Health Care Systems
summary
Background/Purpose
Venous thromboembolism (VTE)
Pulmonary embolism (PE)
Lower extremity deep vein thrombosis (LE-DVT)
VTE is a serious and preventable complication of systemic therapy in cancer patients
method
Utilizing retrospective data on patients diagnosed with cancer from 2011 to 2020
HHS
Harris Health System
RAM
parsimonious risk assessment model
VA
Veterans Affairs health care system
A RAM was derived using least absolute shrinkage and selection operator regression of HHS (n = 9769)
External validation using the Department of Veterans Affairs (VA) health care system (n =79517)
Bootstrapped c-statistics and calibration curves are used to evaluate the discrimination and fit of external models.
Create dichotomous risk stratification using integer scores and compare with Khorana score (KS)
Baseline covariates were compared between cohorts using standardized mean differences (SMD), where SMD greater than 0.1 was considered significantly different.
Finally, the model performance was tested across demographic subgroups to ensure generalizability
New RAM has similar discriminatory power across age, sex, and racial/ethnic subgroups in HHS and VA health care system cohorts (Data Supplement)
result
At 6 months, 590 (6.2%) and 437 (4.6%) patients in HHS developed VTE and PE/LE-DVT, respectively
VTE and PE/LE-DVT occurred in 4,027 (5.1%) and 3,331 (4.2%) patients, respectively, in the VA healthcare system
Based on the final list of 11 predictors in the HHS derivation cohort, we created a new VTE risk score by adding a weighted integer score (median, 3 [IQR, 2-5])
To mimic the KS classification implemented in previous clinical trials, risk groups were dichotomized based on a predetermined clinical threshold of 7%-8% overall VTE at 6 months, which corresponded to a score of 31 in the high-risk group
New RAM grouping improves discrimination and classification compared to KS with cutoff of 2
Assessment at initiation of systemic therapy
New RAM includes components of KS
Modified cancer subtypes
cancer staging
Systemic treatment categories
History of VTE
History of paralysis/immobility
Recent hospitalizations
Asian/Pacific Islander ethnicity
The c-statistics for the HHS and VA healthcare systems were 0.71 and 0.68, respectively (and KS were 0.65 and 0.60, respectively)
The new RAM appropriately reclassified 28% of patients and increased the proportion of VTE in the high-risk group in the validation dataset from 37% to 68%
Simple additive fractions can be easily implemented and calculated in real time without the need for external websites or nomograms
in conclusion
The novel RAM stratifies cancer patients into high-risk groups, with a cumulative incidence of VTE of 8%-10% and PE/LE-DVT of 7% at 6 months (3% and 2%, respectively, in the low-risk group)
This model improves performance over original KS and doubles the number of VTE events in high-risk tiers
Prospective studies are encouraged for additional external validation
Words are not as good as table
Table 1
Baseline clinical characteristics of patients with acute heart failure
Positive event baseline
Table 2
Derivation of a new VTE risk assessment model 6 months after initiation of systemic therapy in a Harris Health System cohort
Table 3
Simplifying the performance of VTE risk assessment models in derivation and validation datasets
Table 4
Comparison between the new risk assessment model and the original KS
Not as shown
Figure 1
Patient selection and exclusion in derivation and validation cohorts
Figure 2
Incidence of VTE stratified in derivation and validation cohorts by new risk assessment model
(A) Overall VTE and (B) PE/LE-DVT in the Harris Health System derived cohort
(C) Overall VTE and (D) PE/LE-DVT in the Veterans Affairs Healthcare System Validation Cohort
Figure 3
Risk stratification based on XGBoost
(A) ROC of XGBoost
(B) Kaplan-Meier curve
Figure 4
(A) Features that have the greatest impact on predictions (ordered from most important to least important)
(B) Distribution of the impact of each feature on model output
In each row, each point represents a patient. The color of the points represents the feature value: red represents larger values, blue represents smaller values
(C and D) Individualized predictions for two patients are shown.
The red and blue bars represent risk factors and protective factors respectively; the longer the bar, the greater the importance of the feature.
Supplementary material
Method 1
Data extraction and reconciliation between two healthcare systems
Method 2
Validation of computable phenotypes for venous thromboembolism (VTE) outcomes
Method 3
Derivation and validation of new risk assessment models
Table S1
Baseline variables included in model derivation
Table S2
Systemic treatment classification
Table S3
International Classification of Diseases (ICD) algorithm used to determine study results
Table S4
Natural language processing (NLP) algorithm for determining research results
Table S5
Performance of combined ICD and NLP algorithms at each site
Table S6
Logistic regression model of cancer subtype reclassification on thrombosis risk
Table S7
Ranking of importance of LASSO-selected variables for overall VTE and PE/LE-DVT in the HHS-derived cohort at λ 1se
Table S8
Variables in the multivariable logistic regression model of overall VTE in the HHS-derived cohort
Table S9
Original KS score vs. new model performance in derivation and validation cohorts
Table S10
Sociodemographic subgroup analysis of a new risk assessment model in derivation and validation cohorts
Table S11
Comparison with previous landmark studies
Figure S1
Covariate selection by LASSO model for overall VTE and PE/LE-DVT outcomes
Figure S2
Calibration plot of the new risk assessment model in the validation cohort
Figure S3
Cumulative incidence of VTE in derivation and validation cohorts by KS score and new model
Figure S4
Derivation and validation of overall survival for cohorts