MindMap Gallery Biology-Transcription Mind Map
This is a mind map about biology-transcription, including eukaryotes, RNA processing, prokaryotes, etc.
Edited at 2023-11-24 11:58:40This is a mind map about bacteria, and its main contents include: overview, morphology, types, structure, reproduction, distribution, application, and expansion. The summary is comprehensive and meticulous, suitable as review materials.
This is a mind map about plant asexual reproduction, and its main contents include: concept, spore reproduction, vegetative reproduction, tissue culture, and buds. The summary is comprehensive and meticulous, suitable as review materials.
This is a mind map about the reproductive development of animals, and its main contents include: insects, frogs, birds, sexual reproduction, and asexual reproduction. The summary is comprehensive and meticulous, suitable as review materials.
This is a mind map about bacteria, and its main contents include: overview, morphology, types, structure, reproduction, distribution, application, and expansion. The summary is comprehensive and meticulous, suitable as review materials.
This is a mind map about plant asexual reproduction, and its main contents include: concept, spore reproduction, vegetative reproduction, tissue culture, and buds. The summary is comprehensive and meticulous, suitable as review materials.
This is a mind map about the reproductive development of animals, and its main contents include: insects, frogs, birds, sexual reproduction, and asexual reproduction. The summary is comprehensive and meticulous, suitable as review materials.
Transcribe
eukaryotic
Transcription-related enzyme⁄factors
RNA polymerase
Pol I: large ribosomal RNA precursor gene
Pol II: almost all protein-coding genes
Pol III: tRNA genes, some small nuclear RNA genes and 5SrRNA genes
mediator protein complex
Some subunits are conserved from yeast to humans
Srb4\Med17 is almost required for intracellular transcription of all Pol II genes.
Pol Ⅱ intermediary protein universal transcription factor = Pol Ⅱ holoenzyme
Different activators bind to different subunits of the intermediary protein to bring polymerase II to different genes. Regulates CTD kinase within TFⅡH to aid transcription initiation
DNA regulatory protein
Often include chromatin (nucleosome) modifying enzymes
General transcription factor GTF-initiation phase
transcription process
start
core promoter
TFIIB recognition element (BRE), TATA element (box), initiation codon (Inr), downstream promoter element (DPE)
other sequence elements
Proximal element of promoter, upstream activator sequence, enhancer, silencer, boundary element, insulator
preinitiation complex formation
The TATA element of the promoter is recognized by TFIIID and combined into TBP, distorting the DNA
The TBP-DNA complex platform recruits other general transcription factors and polymerases, among which TFⅡA, TFⅡBⅡ, and TFⅡF together with the polymerase, followed by TFⅡE, TFⅡH
Polymerase phosphorylation occurs during promoter escape
extend
After the formation of the preinitiation complex, the promoter unwinds and enters the elongation phase
change
Pol II sheds most of the initiation factors, such as general transcription factors and mediator proteins
Recruit elongation factors, such as hSPT5, TFIIS (with proofreading function), ELL family (inhibit transient pauses)
termination
torpedo model
allosteric model
RNA processing
5' end capping, splicing, 3' end polyadenylation
Prokaryotic
Transcription-related enzymes\factors
RNA polymerase
delta initiation factor
transcription process
start
step
The polymerase initially binds to the promoter to form a closed complex
Closed complex transforms into open complex
Isomerization, no ATP hydrolysis required
Two significant structural changes
The forceps at the front of the polymerase clamp firmly on the downstream DNA
There is an important shift in the position of the N-terminal region of δ
Promoter escape—abortive initiation
delta initiation factor
Mediates the binding of polymerase to the promoter, converting the core enzyme into a form that only initiates transcription at the promoter - RNA polymerase holoenzyme
The UP element is not recognized by delta factors and provides additional interactions to enhance polymerase binding to the promoter.
Transcription is initiated by RNA polymerase, no primer is required, and its specific interaction is specific only for A
extend
elongation polymerase
Proofreading while compositing
Proofreading function
PyrophosphorylationEdit
HydrolysisEdit
termination
terminator
Rho-independent
Also called intrinsic terminator
two sequence elements
a short inverted repeat sequence
About 8 A:T base pair sequences
Post-transcriptionally affects polymerase, acting on RNA to form a hairpin structure that destroys the elongation complex
Rho-dependent
Binds to single-stranded RNA when it leaves the polymerase, has ATPase activity, and uses ATP hydrolysis energy
specificity
Rho binding site (rut) specific
Unable to bind to any transcript being translated