MindMap Gallery enzyme
This is a mind map about enzymes. Enzymes are a type of biological catalysts that can accelerate the rate of chemical reactions without changing the total energy change of the reaction. Enzymes are mostly composed of proteins (although there are also a few enzymes composed of RNA, called ribozymes), and have a high degree of specificity and catalytic efficiency.
Edited at 2024-12-09 16:50:32Find a streamlined guide created using EdrawMind, showcasing the Lemon 8 registration and login flow chart. This visual tool facilitates an effortless journey for American users to switch from TikTok to Lemon 8, making the transition both intuitive and rapid. Ideal for those looking for a user-centric route to Lemon 8's offerings, our flow chart demystifies the registration procedure and emphasizes crucial steps for a hassle-free login.
これは稲盛和夫に関するマインドマップです。私のこれまでの人生のすべての経験は、ビジネスの明確な目的と意味、強い意志、売上の最大化、業務の最小化、そして運営は強い意志に依存することを主な内容としています。
かんばんボードのデザインはシンプルかつ明確で、計画が一目で明確になります。毎日の進捗状況を簡単に記録し、月末に要約を作成して成長と成果を確認することができます。 実用性が高い:読書、早起き、運動など、さまざまなプランをカバーします。 操作簡単:シンプルなデザイン、便利な記録、いつでも進捗状況を確認できます。 明確な概要: 毎月の概要により、成長を明確に確認できます。 小さい まとめ、今月の振り返り掲示板、今月の習慣掲示板、今月のまとめ掲示板。
Find a streamlined guide created using EdrawMind, showcasing the Lemon 8 registration and login flow chart. This visual tool facilitates an effortless journey for American users to switch from TikTok to Lemon 8, making the transition both intuitive and rapid. Ideal for those looking for a user-centric route to Lemon 8's offerings, our flow chart demystifies the registration procedure and emphasizes crucial steps for a hassle-free login.
これは稲盛和夫に関するマインドマップです。私のこれまでの人生のすべての経験は、ビジネスの明確な目的と意味、強い意志、売上の最大化、業務の最小化、そして運営は強い意志に依存することを主な内容としています。
かんばんボードのデザインはシンプルかつ明確で、計画が一目で明確になります。毎日の進捗状況を簡単に記録し、月末に要約を作成して成長と成果を確認することができます。 実用性が高い:読書、早起き、運動など、さまざまなプランをカバーします。 操作簡単:シンプルなデザイン、便利な記録、いつでも進捗状況を確認できます。 明確な概要: 毎月の概要により、成長を明確に確認できます。 小さい まとめ、今月の振り返り掲示板、今月の習慣掲示板、今月のまとめ掲示板。
enzyme
definition
biocatalyst
speed up chemical reactions
Does not change reaction equilibrium
not consumed
protein properties
Composed of amino acids
Have a specific three-dimensional structure
active center
Adjustment area
Denaturation affects activity
Mechanism of action
lock-key model
Enzyme specifically binds to substrate
Form enzyme substrate complex
Catalytic reaction occurs
release product
induced fit model
Substrate-induced changes in the shape of the enzyme active center
Improve catalytic efficiency
Classification
According to the type of catalytic reaction
oxidoreductase
Catalytic redox reaction
transferase
Catalytic group transfer
hydrolase
Catalytic hydrolysis reaction
Lyase
Catalyze intramolecular bond cleavage
isomerase
Catalyze changes in molecular structure
Ligase
Catalyzes intermolecular bond formation
According to EC numbering system
combination of numbers and letters
Reflect the classification and function of enzymes
characteristic
specificity
substrate specificity
specific recognition substrate
stereospecificity
There are requirements for substrate stereochemistry
activity regulation
Activators increase activity
Substrates, metal ions, etc.
Inhibitors reduce activity
competitive inhibition
definition
A way to regulate enzyme activity
Inhibitors compete with substrates for the enzyme's active site
Inhibitors and substrates are structurally similar
leading to reduced enzyme activity
Inhibitory effects can be reversed by increasing substrate concentration
Mechanism of action
Inhibitors compete with substrates for the active center of the enzyme
Inhibitors temporarily occupy the active site
Prevent the binding of substrate and enzyme
The enzyme's active site is occupied by the wrong molecule
Prevents normal catalytic reactions
Features
reversible inhibition
Inhibitors do not permanently bind to the enzyme
Inhibitory effects can be reduced by increasing substrate concentration
saturation kinetic curve
Vmax remains unchanged, Km increases
Shown as an increase in Michaelis-Menten constant Km
Example
Malathion inhibits acetylcholinesterase
Organophosphorus pesticides as competitive inhibitors
Active site of enzyme that competes with acetylcholine
Inhibition of succinate dehydrogenase by malonate
Malonic acid and succinic acid have similar structures
Competitively inhibits the oxidation reaction of succinic acid
application
drug design
Designing drugs using the principle of competitive inhibition
used to treat certain diseases
Pesticide development
Development of competitive inhibitors as pesticides
Control pests by inhibiting their specific enzymes
Biotechnology
Controlling enzymatic reactions in industrial processes
Adjust product yield by adding competitive inhibitors
noncompetitive inhibition
definition
Inhibitors and substrates do not compete for the same active site
The inhibitor binds to another site on the enzyme
Features
Does not change the maximum reaction rate (Vmax)
Increase Michaelis Constant (Km)
Affect enzyme activity
Reduce apparent affinity of enzyme
Reduce enzyme conversion efficiency of substrate
inhibitory mechanism
Binds to the regulatory site of the enzyme
Cause conformational changes in enzymes
Prevent substrate from entering the active site
Change the shape or charge of the active site
example
Alpha-ketoglutarate dehydrogenase complex inhibition
Through the accumulation of NADH
Phosphorylase inhibition
via phosphorylase kinase
application
drug design
Regulatory sites for specific enzymes
biochemical research
Explore regulatory mechanisms beyond the active site of enzymes
Compare with competitive inhibition
competitive inhibition
Inhibitors compete with the substrate for the same active site
Inhibition can be overcome by increasing substrate concentration
noncompetitive inhibition
Inhibitors and substrates do not compete for the same active site
Inhibition cannot be overcome by increasing substrate concentration
anticompetitive inhibition
definition
A way to regulate enzyme activity
Inhibitor binds to enzyme substrate complex
Does not compete with free enzymes or substrates
Different from the enzyme binding site
leading to reduced enzyme activity
Different from competitive inhibition
In competitive inhibition, the inhibitor competes with the substrate for the same binding site.
Mechanism of action
Inhibitors bind to regulatory sites on enzymes
Usually a region distinct from the active site
Change the conformation of an enzyme
Makes the formation of enzyme-substrate complexes difficult
Reduce enzyme affinity for substrate
Increase Km value (Michaelis constant)
Does not affect Vmax (maximum reaction rate)
Features
Enzyme activity can be partially overcome by increasing substrate concentration
When the substrate concentration is high enough, the inhibitory effect is weakened
Inhibitory effect is independent of substrate concentration
Substrate concentration-independent properties are key to its definition
example
How certain drugs work
For example, the inhibitory effect of sulfa drugs on bacteria
Natural regulation of biochemical processes
For example, feedback inhibition of certain metabolic pathways
application
drug design
Development of anticompetitive inhibitors against specific enzymes
used to treat specific diseases
industrial production
Regulation of enzymatic reactions by anticompetitive inhibition
Optimize production processes and improve product purity
research methods
Enzyme kinetics experiment
Analyzing the type of inhibition by measuring reaction rates
molecular modeling
Predict the binding mode of inhibitors to enzymes
X-ray crystallography
Determine the three-dimensional structure of inhibitor-enzyme complexes
Temperature and pH effects
Optimum temperature and pH
Reduced activity beyond range
Thermal stability
Thermostable enzymes and thermolabile enzymes
Determination, isolation and purification of enzyme activity
industrial production
food processing
fermentation process
Detergent
remove stains
pharmaceutical
Synthetic drug intermediates
medical research
disease diagnosis
Enzyme activity assay
treat
enzyme inhibitors as drugs
Biotechnology
genetic engineering
Enzymes as tool enzymes
metabolic engineering
Modifying microbial metabolic pathways
Determination of enzyme activity
Define enzyme activity
The rate of an enzyme-catalyzed reaction
The relationship between the amount of enzyme and catalytic efficiency
Determination method
Spectroscopy
Measured using UV-visible spectroscopy
Calculation of activity from absorbance changes
Fluorescence method
Using fluorescently labeled substrates
Measure changes in fluorescence intensity
Colorimetry
Use developer
Activity determined by color change
gas chromatography
Analyze gas products
Calculate activity from peak area
Influencing factors
temperature
Enzyme activity changes with temperature
pH value
Dependence of enzyme activity on pH
substrate concentration
The relationship between enzyme activity and substrate concentration
inhibitor
Enzyme activity is affected by inhibitors
Enzyme separation and purification
preliminary separation
crude extraction
Organizational fragmentation
centrifugation
solvent precipitation
Taking advantage of different solubilities
Isolate proteins
Purification steps
Chromatography
Ion exchange chromatography
separation based on charge
gel filtration chromatography
Separate according to molecular size
Affinity chromatography
Separation using specific binding
electrophoresis technology
SDSPAGE
Protein molecular weight separation
isoelectric focusing electrophoresis
Separation based on isoelectric point
Purity testing
Protein concentration determination
Bradford method
Lowry method
Activity assay
Verify purification effect
SDSPAGE analysis
Check protein purity
Enzyme activity recovery rate
Calculate activity loss during purification
Optimize purification conditions to increase recovery
Introduction to Enzyme Engineering
early observations
fermentation phenomenon
The existence of enzymes was discovered in the 19th century
Naming and classification
systematic nomenclature
EC numbering system
Structural and functional studies
X-ray crystallography
reveal 3D structure
molecular biology technology
Gene cloning and expression
future research directions
enzyme engineering
Design new enzymes
Improve stability and activity
synthetic biology
Build biosynthetic pathways
Produce complex compounds
computational biology
Simulate enzyme catalytic process
Predict enzyme function